Lupita Ruiz-Jones, Ph.D.

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Courses

• ENV100 Introduction to Environmental Issues
• ENV115/L Marine Environmental Issues and Lab
• ENV415/L Advanced Marine Science and Lab
• ENV450 Earth System Science
• ENV485 Environmental Capstone Experience
• Special topics, including: Pandemics and the Environment

Biography

Dr. Lupita Ruiz-Jones is passionate about nature and living sustainably. Her experience living in different types of environments (New Mexico, southern Mexico, Georgia, Italy, California, and Hawaii) has cultivated an interest in understanding the science underlying nature and how humans impact nature. Dr. Lupita is an alumna of Chaminade University’s Environmental Studies program. During her time at Chaminade she became fascinated by coral reef science and pursued a PhD in coral eco-physiology at Stanford University. For her postdoc she received the Thinking Matters Teaching Fellowship at Stanford. For 4 years she engaged in team teaching and learned pedagogical practices for effective learning. She taught first-year students how to think critically in the sciences. In 2017 she began a research collaboration with the Gates Coral Lab at the University of Hawaii that focused on assesses coral genetic relatedness across an environmental mosaic in Kaneohe Bay. Now Dr. Lupita focuses on new research projects with community organizations on Oahu focused on specific coastal restoration projects that teach students about environmental stewardship. When she is not teaching or doing science, she enjoys traveling, art, and being in nature, especially surfing 🙂

Students’ research poster from spring 2021
Video of fieldwork with students

Education

Undergraduate
I was first introduced to marine biology research as an undergraduate fellow in the Undergraduates Mentoring in Environmental Biology program (later renamed Undergraduate Research and Mentoring) at the University of Hawai’i. I worked in the lab of Dr. Michael Hadfield at Kewalo Marine Lab studying neuron rearrangement during metamorphosis in a nudibranch found commonly in Hawaiian waters, Phestilla sibogae. My undergraduate research experience inspired me to pursue a PhD in coral biology and also culminated in my first scientific publication.

Doctoral
I transitioned to Stanford University in 2010 to start my graduate studies in the lab of Dr. Stephen Palumbi at Hopkins Marine Station. My dissertation work was focused on investigating the eco-physiology of the reef-building coral Acropora hyacinthus. My fieldwork was based on Ofu Island in American Samoa—a magical and remote island. Using transcriptome sequencing, I investigated how this species regulates gene expression when exposed to different types of environmental conditions in the reef. I also developed an approach to measured 5-day growth rates to understand how sensitive the calcification mechanism is to environmental variability in the reef.

Postdoctoral
After the first year of my teaching postdoc, I started a research collaboration with the amazing late Dr. Ruth Gates. I am working with two of her outstanding PhD students in the now Gates Coral Lab. Our research collaboration is investigating the spatial patterns of genetic connectivity in a commonly found reef-building coral in Hawaii, Montipora capitata. Our work is focused in Kaneohe Bay, which I find really interesting because it is a spatially heterogeneous mosaic and an urban reef on Hawai’i’s most populated island. Since the summer of 2017, we have been collecting various environmental data, including temperature, sedimentation rates, and water flow dynamics. We are using reduced-representation genome sequencing to analyze the genetic make-up of 600 coral colonies across the bay. Our goal is to develop a seascape map of the bay with environmental and genetic information. We are also collaborating with Dr. Josh Madin’s lab at the Hawai’i Institute of Marine Biology to investigate patterns of coral bleaching across all our sites using photogrammetry.

Academic Degrees

Ph.D., Biology, Stanford University (2016)
B.S., Environmental Studies, Chaminade University of Honolulu (2009)

Selected Publications

Rocha de Souza, M, Caruso, C, Ruiz-Jones, L, Crawford, D, Tonnen, R (2022). Community composition of coral associated Symbiodiniaceae differs across fine scale environmental gradients in Kaneohe Bay. Royal Society Open Science.

Caruso, C., Rocha de Souza, M., Ruiz-Jones, L., Conetta, D., Hancock, J., Hobbs, C., Hobbs, C., Kahkejian, V., Kitchen, R., Marin, C., Monismith, S., Madin, J., Gates, R., & Drury, C. (2022). Genetic patterns in Montipora capitata across an environmental mosaic in Kāne’ohe Bay, O’ahu, Hawai’i. Molecular Ecology, 00, 1–13. https://doi.org/10.1111/mec.16655

Ruiz-Jones, LJ & Palumbi, SR (2019). Sub-weekly coral linear extension measurements in a coral reef. Journal of Experimental Marine Biology and Ecology, 516:114-122.

Thomas, L, Rose, N, Bay, R, Lopez, E, Morikawa, M, Ruiz-Jones, L, & Palumbi, S (2018). Mechanisms of heat tolerance in reef-building corals across a fine-grained environmental mosaic. Frontiers in Marine Science, 4:434.

Ruiz-Jones, LJ & Palumbi, SR (2017). Heat pulses during low tide alter coral transcription and may protect colonies from future bleaching. Science Advances, 3:e1601298.

Ruiz-Jones, LJ & Palumbi, SR (2015). Transcriptome-wide changes in coral gene expression at noon and midnight under field conditions. Biological Bulletin, 228:227-241.

Ruiz-Jones, GJ & Hadfield, MG (2011). Loss of sensory elements in the apical sensory organ during metamorphosis in the nudibranch Phestilla sibogae. Biological Bulletin, 220:39-46.

Strathmann, RR, Strathmann, MF, Ruiz-Jones, G, & Hadfield, MG (2010). Effect of plasticity in hatching on duration as a precompetent swimming larva in the nudibranch Phestilla sibogae. Invertebrate Biology, 129:309–318.